Tomoko OKAZAKI-OHTA Ph.D.

JST Research Associate
Tsujii Group, CREST
Department of Computer Scienece
Faculty of Information Science and Technology
University of Tokyo

phone:  +81-3-5803-1697
  fax:  +81-3-5802-8872

  • Recent publications

    Ohta, T., Tateisi, Y., Kim, J.D., Mima, H. and Tsujii, J.: GENIA Corpus: an Annotated Research Abstract Corpus in Molecular Biology Domain, Proc. of the Human Language Technology Conference, to be appeared, Mar. 2002. pdf file

    Ohta, T., Tateisi, Y., Kim, J.D., Mima, H. and Tsujii, J.: Ontology Based Corpus Annotation and Tools, Proc. of the 12nd Workshop on Genome Informatics, pp469-470, Dec. 2001. pdf file

    Kim, J.D., Ohta, T., Tateisi, Y., Mima, H. and Tsujii, J.: XML-Based Linguistic Annotation of Corpus, Proc. of the First NLP and XML Workshop, pp47-53, Nov. 2001.

    Ohta, T., Tateisi, Y., Kim, J.D., Lee, S.Z. and Tsujii, J.: GENIA corpus: A Semantically Annotated Corpus in Molecular Biology Domain, Proc. of the 9th International Conference on Intelligent Systems for Molocular Biology (ISMB-2001) poster session, Jul. 2001.

    Ohta, T., Tateisi, Y. and Tsujii, J.: Tools for Ontology-based Corpus Annotation, Proc. of the Pacific Symposium on Biocomputing2001 (PSB2001), poster session, Jan. 2001. posters

    Collier, N., Mima, H., Lee, S.Z., Ohta, T., Tateisi, Y., Yakushiji, A. and Tsujii, J.: The GENIA Project: Knowledge Acquisition from Biology Texts, Proc. of the 11th Workshop on Genome Informatics, pp.448-449, Dec. 2000. ps file

    Tateishi, Y., Ohta, T., Collier, N., Nobata, C., and Tsujii, J.: Building an Annotated Corpus from Biology Research Papers, Proc. of the COLING 2000 Workshop on Semantic Annotation and Intelligent Content, pp. 28-34, 2000. pdf file

    Tateisi,Y., Ohta,T., Takai,T. and Tsujii,J.: Ontology for Biological Reaction Events,Proc. of the 10th Workshop on Genome Informatics, Dec. 1999.ps file

    Ohta,T. Tateisi,Y., Collier,N., Nobata,C., Ibushi,K. and Tsujii,J.:A Semantically Annotated Corpus from MEDLINE Abstracts, Proc. of the 10th Workshop on Genome Informatics, Dec. 1999. ps file

    建石由佳, 大田朋子, Collier,N., 野畑周, 辻井潤一 :生物学文献からのタグ付きコーパスの作成, 情報処理学会第 59回全国大会講演論文集 (Proc. of Zenokutaikai'99, in Japanese)., pp.113-114, 1999. ps file

    大田朋子, 建石由佳, Collier,N., 野畑周, 辻井潤一 : 医学生物学論文からのタグ付きコーパスの作成 ("Building an Annotated Corpus from Biomedical Research Papers"), 情報処理学会研 究報告 (Proc. of the meeting of the Japan Information Processing Society SGI on natural language NL-134, in Japanese,pp93-98, 1999 ps file

    Okazaki-Ohta,T., Takagi,T.: Development of Imformation Extraction Tool: Toward Construction of Protein-Protein Interaction Database, Proc. of the 9th Workshop on Genome Informatics, Dec.1998.

    Hishiki,T., Collier,N., Nobata,C., Okazaki-Ohta,T., Ogata,N., Sekimizu,T., Steiner,R., Park,HS. and Tsujii,J.: ,Developing NLP Tools for Genome Informatics: An Information Extraction Perspective, Proc. of the 9th Workshop on Genome Informatics, Dec.1998.

    Okazaki,T., Kitano,K., Uchiyama,I. and Takagi,T.: p53MDB: p53 Mutation Database, Proc. of the 8th Workshop on Genome Informatics, Dec.1997.

    Ohta,Y., Yamamoto,Y., Okazaki,T. and Takagi,T.: Automatic construction of knowledge base from biological papers, Proc. of the Fifth International Conference on Intelligent Systems for Molocular Biology (ISMB-97), pp218-225, Jun.1997.pdf file

    Okazaki,T., Kaizawa,M. and Mizushima,H.: Establishment and management of Transcription Factor DataBase TFDB, Proc. of the 7th Workshop on Genome Informatics, pp218-219, Dec.1996.

    Adachi,J., Ookawa,K., Shiseki,M., Okazaki,T., Tsuchida,S., Morishita,K. and Yokota,J.: Induction of apoptosis but not G1 arrest by expression of the wild-type p53 gene in small cell lung carcinoma <96405265>, Cell Growth & Differentiation, 7, pp879-886, Jul.1996.

    Okazaki,T., Takita,J., Kohno,T., Handa,H. and Yokota,J.: Detection of amplified genomic sequences in human small-cell lung carcinoma cells by arbitrarily primed-PCR genomic fingerprinting <96328288>, Hum. Genet., 98, pp253-258, Apr.1996.

    Shiseki,M., Kohno,T., Adachi,J., Okazaki,T., Otsuka,T., Mizoguchi,H., Noguchi,M., Hirohashi,S. and Yokota,J.: Comparative allelotype of early and advansed stage non-small cell lung carcinomas <97070797>, Genes, Chromosomes & Cancer, 17, pp71-77, Apr.1996.

    Adachi,J., Shiseki,M., Okazaki,T., Ishimaru,G., Nogychi,M., Hirohashi,S and Yokota,J.:Microsatellite instability in primary and metastatic lung carcinomas <96187129>, Genes, Chromosomes & Cancer, 14, pp301-306, Aug.1995.

    Miyagi,Y., Sugiyama,A., Asai,A., Okazaki,T., Kuchino,Y and Kerr,S.J.: Elevated levels of eukaryotic translation initiation factor eIF-4E, mRNA in a broad spectrum of transformed cell lines <95285463>, Cancer Letters, 91, pp247-252, Feb.1995.

    Nemoto,F., Okazaki,T., Mizushima,H., Muller,W.E.G. and Kuchino,Y. :Nucleotide sequence of the human tRNAuug gene <91252228>, Nucleic Acid Research, 19, p.2779, Apr.1991.

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    Tomoko OKAZAKI-OHTA Ph.D. okap@is.s.u-tokyo.ac.jp
    Last Updated: Feb 27, 2002
    Copyright(C) Tomoko OKAZAKI-OHTA, 2000. All rights reserved.